MaCRUISEplus_v1_0_0ΒΆ

  • What does it do?

Conduct consistent multi-atlas brain segmentation and cortical surface reconstruction

  • Requirements

Software: MIPAV, JIST, CRUISE, JAVA, MATLAB Atlas: BrainCOLOR

  • Resources *
OUTLOG - STDOUT and STDERR from the process on the grid
PBS - The DRMAA compliant batch script to run the job
PDF - The output PDF file for determining QA status
SNAPSHOTS - Thumbnail of the first page of the PDF resource for viewing on XNAT
Raw - Input files (1) T1w MRI image (2) Multi-atlas segmentation label image (3) Flair image
MATLAB - Matlab batch
CorticalSeperation - Intermediate files from cortical surface reconstruction
ToadsSeperate - Intermediate files from TOADS segmentation
TGDMinputs - Intermediate files for TGDM
Surfaces - Final mesh surface files
Surfaces_MNI - Final mesh surface files in MNI space
Surfaces_FreeView - Final mesh surface files can be loaded by FreeView
Thickness - Cortical thickness
SegRefine - Final segmentation files refined by CCSE
  • References

Yuankai Huo, Andrew J Plassard, Aaron Carass, Susan M Resnick, Dzung L Pham, Jerry L Prince, Bennett A Landman “Consistent Cortical Reconstruction and Multi-atlas Brain Segmentation” NeuroImage, 2016.

  • Version History

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