nonrigid_reg_to_ATLAS

• What does it do?
• Requirements
• Resources *

OUTLOG - STDOUT and STDERR from the process on the grid

PBS - The DRMAA compliant batch script to run the job

PDF - The output PDF file for determining QA status

SNAPSHOTS - Thumbnail of the first page of the PDF resource for viewing on XNAT

ANTS_INV_WARP -

ANTS_WARP -

ANTS AFFINE -

NIFTY_REG_AFFINE

MATLAB -

• References
• Version History

<revision> <name> <date> <lines changed>

r2960 | bdb | 2015-07-06 10:34:37 -0500 (Mon, 06 Jul 2015) | 1 line

Add suffix_proc option for dax 0.3.1, also change vX.X.X to vX_X_X

r2655 | yben | 2015-05-11 09:02:40 -0500 (Mon, 11 May 2015) | 1 line

Switching Modules/Processors/spiders for the version 0.3.0 of dax package (generic functions build in dax)

r2563 | yben | 2015-04-13 11:03:59 -0500 (Mon, 13 Apr 2015) | 1 line

Fixing nonrigid_reg_to_ATLAS

r1992 | yben | 2014-10-16 12:46:53 -0500 (Thu, 16 Oct 2014) | 2 lines

Removing MASIMATLAB_PATH called from dax and instead getting path from VUIIS_path_settings.py in processors/ Adding all the path to processors/VUIIS_path_settings.py for each imaging software used.

r1979 | yben | 2014-10-10 15:07:51 -0500 (Fri, 10 Oct 2014) | 2 lines

Adding “-singleCompThread” to every matlab called from regular spiders. Fixing bedpost problem (using fa.nii instead of dti)

r1903 | yben | 2014-08-15 11:42:56 -0500 (Fri, 15 Aug 2014) | 2 lines

Final commit to work with the new package dax. Fix some imports for modules/spiders/processors/Xnat_tools (fs)

r1901 | yben | 2014-08-15 09:05:31 -0500 (Fri, 15 Aug 2014) | 4 lines

Important Commit: 1) Adding new spiders using the new template 2) Switching old spiders to new template 3) Using new package dax

r1496 | yben | 2014-02-18 14:50:19 -0600 (Tue, 18 Feb 2014) | 1 line

Name of the output image need to have the project/subject/experiment in the filename

r1493 | yben | 2014-02-18 10:27:07 -0600 (Tue, 18 Feb 2014) | 1 line

Giving full path for the function WarpImageMultiTransform in Ants path.

r1491 | yben | 2014-02-17 14:04:25 -0600 (Mon, 17 Feb 2014) | 1 line

working on the generation of the PDF for nonrigid spider

r1461 | yben | 2014-02-11 15:04:33 -0600 (Tue, 11 Feb 2014) | 1 line

Debugging intra sess reg / nonrigid reg to Atlas

r1415 | masispider | 2014-01-31 18:15:26 -0600 (Fri, 31 Jan 2014) | 1 line

Intra / nonrigid registration spider in fixing mode like EVE

r1393 | yben | 2014-01-29 15:41:02 -0600 (Wed, 29 Jan 2014) | 1 line

Spider nonrigid_reg_to_ATLAS working again and ready to be used

r1392 | masispider | 2014-01-29 15:33:30 -0600 (Wed, 29 Jan 2014) | 1 line

Editing Spider nonrigid and WhiteMatter

r1385 | masispider | 2014-01-29 11:03:48 -0600 (Wed, 29 Jan 2014) | 1 line

Debugging Nonrigid

r1384 | yben | 2014-01-29 10:33:44 -0600 (Wed, 29 Jan 2014) | 1 line

Debugging non_rigid spider/processor

r1383 | masispider | 2014-01-29 10:17:15 -0600 (Wed, 29 Jan 2014) | 1 line

Spider_intra_sess_reg fixed / working on nonrigid spider

r1381 | yben | 2014-01-28 16:19:00 -0600 (Tue, 28 Jan 2014) | 1 line

Debugging ...

r1379 | yben | 2014-01-28 15:37:28 -0600 (Tue, 28 Jan 2014) | 1 line

New version of non rigi reg working with the processors and spiders.

r1188 | yben | 2013-12-12 09:31:04 -0600 (Thu, 12 Dec 2013) | 1 line

Moving Spiders to XnatUtils of the package api/cci

r1049 | masispider | 2013-11-15 13:35:55 -0600 (Fri, 15 Nov 2013) | 1 line

Organizing the folder in a better way with the cci package comming out soon. One folder for the processors, one for the modules and one for the spider working with the new way

Current Contact Person <date> <name> <email / URL>