Multi_Atlas_v2_0_0ΒΆ

  • What does it do?
  1. Conduct multi-atlas NLSS segmentation pipeline and generate whole brain segmentation with 132 labels
  2. Generate total intracranial volume (TICV) and posterior fossa volume (PFV)
  3. Fix the inaccurate header issue
  • Requirements

Software: MIPAV, JIST, JAVA, MATLAB Atlases: BrainCOLOR, BC2

  • Resources *
OUTLOG - STDOUT and STDERR from the process on the grid
PBS - The DRMAA compliant batch script to run the job
PDF - The output PDF file for determining QA status
SNAPSHOTS - Thumbnail of the first page of the PDF resource for viewing on XNAT
TICV - Final TICV and PFV outputs
OUT_ZIP - Intermediate log files
VOL_TXT - Volumetric information
SEG - Final BrainCOLOR segmentation in original image space
MNI_SEG - Final BrainCOLOR segmentation in MNI space
MNI - T1w MRI image in original image space
MATLAB - Matlab script
  • References
  • Version History

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