Multi_Atlas_v2_0_0ΒΆ
- What does it do?
- Conduct multi-atlas NLSS segmentation pipeline and generate whole brain segmentation with 132 labels
- Generate total intracranial volume (TICV) and posterior fossa volume (PFV)
- Fix the inaccurate header issue
- Requirements
Software: MIPAV, JIST, JAVA, MATLAB Atlases: BrainCOLOR, BC2
- Resources *
OUTLOG - STDOUT and STDERR from the process on the grid
PBS - The DRMAA compliant batch script to run the job
PDF - The output PDF file for determining QA status
SNAPSHOTS - Thumbnail of the first page of the PDF resource for viewing on XNAT
TICV - Final TICV and PFV outputs
OUT_ZIP - Intermediate log files
VOL_TXT - Volumetric information
SEG - Final BrainCOLOR segmentation in original image space
MNI_SEG - Final BrainCOLOR segmentation in MNI space
MNI - T1w MRI image in original image space
MATLAB - Matlab script
- References
- Version History
<date> <name> <brief description of change>
Current Contact Person <date> <name> <email / URL>